Septum
Hierarchy level in atlas is 2: 1 superstructures include it.
abbreviation: SepAbbreviation
Sep
Species
Mouse
Description of part
Collator note: we consider this regions as the superstructure from the septal nuclei. See the rat brain atlas Swanson 1992 and the description of the septum in Jakab and Leranth 1995. The abbreviation was adapted from Swanson 1992.
Part type
gray matter
Nomenclature
Paxinos/Franklin-2001
Endorsement
The approach used by the collator Mihail Bota is not endorsed by the author of the nomenclature.
Collator argument
The hierarchy of this region was constructed using Jakab and Leranth 1995. See also Swanson 1992
Reference
Author:
Paxinos G., Franklin K.B.J.
Title of Book:
The mouse brain in stereotaxic coordinates.
Year:
2001
Pages:
15-60
Edition:
2nd
Publisher:
Academic Press
- Forebrain
- Hypothalamus
- infundibular stem
- Medial zone of the hypothalamus
- supramammillary nucleus
- anterior hypothalamic area
- medial preoptic area
- lateral mammillary nucleus
- premammillary nucleus ventral part
- Dorsomedial hypothalamic nucleus
- premammillary nucleus dorsal part
- retrochiasmatic area
- posterior hypothalamic area
- medial mammillary nucleus lateral part
- ventromedial hypothalamic nucleus
- intermediate lobe of pituitary
- Anterior lobe of the pituitary
- medial eminence internal layer
- Lateral zone of the hypothalamus
- medial eminence external layer
- Periventricular zone of the hypothalamus
- periventricular hypothalamic nucleus
- arcuate hypothalamic nucleus
- Anteroventral periventricular nucleus
- dorsal tuberomammillary nucleus
- suprachiasmatic nucleus
- ventromedial preoptic nucleus
- Paraventricular hypothalamic nucleus
- paraventricular hypothalamic nucleus ventral part
- paraventricular hypothalamic nucleus anterior magnocellular part
- paraventricular hypothalamic nucleus posterior part
- paraventricular hypothalamic nucleus lateral magnocellular part
- paraventricular hypothalamic nucleus anterior parvicellular part
- paraventricular hypothalamic nucleus medial parvicellular part
- paraventricular hypothalamic nucleus dorsal cap
- Amygdala
- bed nucleus of stria terminalis supracapsular part
- posterolateral cortical amygdaloid nucleus (C2)
- basolateral amygdaloid nucleus
- anterior amygdaloid area
- bed nucleus of the stria terminalis medial division
- sublenticular extended amygdala
- medial amygdaloid nucleus
- lateral amygdaloid nucleus
- central amygdaloid nucleus
- bed nucleus of the anterior commissure
- bed nucleus of the stria terminalis lateral division
- bed nucleus of the stria terminalis intermediate division
- nucleus of the commissural stria terminalis
- anterior cortical amygdaloid nucleus
- Amygdalohippocampal area
- bed nucleus of the stria terminalis ventral division
- amygdalostriatal transition area
- Nucleus of the lateral olfactory tract
- posteromedial cortical amygdaloid nucleus (C3)
- intercalated nuclei of the amygdala
- basomedial amygdaloid nucleus
- amygdalopiriform transition area
- bed nucleus of the stria terminalis intraamygdaloid division
- pineal gland
- corpus callosum
- Basal ganglia
- parasubthalamic nucleus
- lateral ventricle
- cerebral cortex
- secondary auditory cortex ventral area
- dorsal endopiriform nucleus
- prelimbic cortex
- frontal association cortex
- ventral orbital cortex
- cingulate cortex area 2
- Ventral endopiriform nucleus
- cingulate cortex area 1
- secondary visual cortex lateral area
- primary somatosensory cortex
- primary somatosensory cortex dysgranular region
- primary somatosensory cortex hindlimb region
- primary somatosensory cortex upper lip region
- primary somatosensory cortex forelimb region
- primary somatosensory cortex shoulder region
- primary somatosensory cortex jaw region
- primary somatosensory cortex barrel field
- medial orbital cortex
- secondary motor cortex
- perirhinal cortex
- Hippocampal region
- retrosplenial agranular cortex
- primary motor cortex
- Agranular insular cortex
- secondary visual cortex mediomedial area
- granular insular cortex
- primary visual cortex
- primary auditory cortex
- infralimbic cortex
- retrosplenial granular cortex
- lateral parietal association cortex
- dorsolateral orbital cortex
- secondary visual cortex mediolateral area
- secondary somatosensory cortex
- secondary auditory cortex dorsal area
- lateral orbital cortex
- claustrum
- ectorhinal cortex
- postsubiculum
- dysgranular insular cortex
- medial parietal association cortex
- subthalamic nucleus
- Olfactory system
- Thalamus
- ventral lateral geniculate nucleus
- Fasciculus retroflexus
- lateral habenular nucleus lateral part
- Anterior group of thalamus
- reticular thalamic nucleus
- posterior thalamic nuclear group
- lateral habenular nucleus medial part
- Midline thalamic nuclear group
- medial geniculate nucleus
- subparafascicular thalamic nucleus
- Mediodorsal thalamic nucleus
- Intralaminar thalamic nuclear group
- medial habenular nucleus
- intramedullary thalamic area
- Lateral nuclear group
- dorsal lateral geniculate nucleus
- Ventral nuclear group
- Septum
- Hypothalamus
Major subparts
| Name | Type |
| nucleus of the horizontal limb of the diagonal band | gray matter |
| septohippocampal nucleus | gray matter |
| medial septal nucleus | gray matter |
| septofimbrial nucleus | gray matter |
| lateral septal nucleus | gray matter |
| nucleus of the vertical limb of the diagonal band | gray matter |
| lambdoid septal zone | gray matter |
